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RNA Interference Technology

RNA Interference Technology

RNA Interference Technology

From Basic Science to Drug Development
Krishnarao Appasani, GeneExpression Systems, Inc., Massachusetts
Andrew Fire, Stanford University, California
Marshall Nirenberg
August 2011
Paperback
9780521205177

    RNA Interference (RNAi) technology has rapidly become one of the key methods used in functional genomics. RNAi is used to block the expression of genes and create phenotypes that can potentially yield clues about the function of these genes. In the postgenomic era, the elucidation of the physiological function of genes has become the rate-limiting step in the quest to develop 'gene-based drugs' and RNAi could potentially play a pivotal role in the validation of such novel drugs. In this overview, the basic concepts and applications of RNAi biology are discussed. Leading experts from both academia and industry have contributed to this invaluable reference. The volume is forwarded by Andrew Fire, one of the winners of the 2006 Nobel Prize for the discovery of RNA Interference.

    Reviews & endorsements

    Review of the hardback: 'This book is very timely. The chapters on the basics of RNAi, siRNA and miRNAs are an excellent summary of the recent origins of this topic and the various sections dealing with RNAi technology provided comprehensive background material. I am sure that, even with the rapid progress in RNAi , this book will be useful for both newcomers to the field wishing to get an overview and for experienced researchers looking for a summary of published information.' David Baulcombe, Sainsbury Laboratory, Norwich

    Review of the hardback: 'Only six years ago Fire and Mello discovered RNAi, as a funny effect in little worms. Now the whole world wants to know about it. In this book Krishnarao Appasani got an all-star crowd of specialists to introduce RNAi: its history, biology, application in genomics research, and possible therapeutic use. Warmly recommended.' Ronald Plasterk, Hubrecht Laboratories, Utrecht

    Review of the hardback: 'A comprehensive treatise on RNA interference has long been needed. That need has now been filled with this book, which places RNAi and its potential squarely in the context of the post human genome era. The successful juxtaposition of the many aspects of RNAi biology and technology should serve to stimulate creative thought across the many diverse disciplines affected by the RNAi revolution.' Ronald K. Scheule, Genzyme Corporation

    Review of the hardback: 'This new book is very comprehensive, in many ways picking up where Hannon's RNAi manual leaves off. A good companion to Hannon.' Frank Slack Ph.D. Yale University

    Review of the hardback: 'This extensive collection of timely articles brings us up to date on the current research on RNAi, its science and applications. It is a must read to learn about current status of the art. Its 35 contributions from leading scientists are subdivided into seven sections to facilitate access to the corresponding articles, and cover every aspect of the subject. This is a rapidly advancing field and it is useful for the newcomer both in academia and in industry to obtain a panoramic view and put the current literature in perspective.' Roberto Weinmann Bristol-Myers Squibb

    Review of the hardback: 'This book provides a window to the exciting new RNA interference revolution with special emphasis on applications for biotechnology. It will provide up-to-date background for academic and industry researchers seeking to make use of this powerful research tool.' Judy Leiberman Harvard Medical School and The CBR Institute for Biomedical Research

    Review of the hardback: '… this most impressive book is not only scientifically informative but also visually appealing. I would have no hesitation recommending this book to anyone interested in RNAi research, particularly newcomers to this daunting area. I am sure this book will become a standard reference point for laboratories working in this area.' Biologist

    Review of the hardback: 'This book provides an excellent, comprehensive description of the current state of the art, in a clear and readily absorbable format, suitable for a wide scientific audience.' Society for General Microbiology

    See more reviews

    Product details

    August 2011
    Paperback
    9780521205177
    546 pages
    254 × 178 × 28 mm
    0.94kg
    Available

    Table of Contents

    • Part I. Basic RNAi, siRNA and Gene Silencing Mechanisms:
    • 1. RNAi beginnings: overview of the pathway in C. elegans
    • 2. Dicer in RNAi: its roles in vivo and utility in vitro
    • 3. Genes required for RNAi
    • 4. MicroRNAs: a small contribution from worms
    • 5. miRNAs in the brain and the application of RNAi to neurons
    • Part II. Design and Synthesis of siRNAs:
    • 6. Design and synthesis of small interfering RNA (siRNA)
    • 7. Automated design and high throughput synthesis of siRNA
    • 8. Rational design of siRNAs with the Sfold software
    • 9. Enzymatic production of siRNAS
    • Part III. Vector Development and In Vivo, In Vitro and In Ovo Delivery Methods:
    • 10. Six methods of inducing RNAi in mammalian cells
    • 11. Viral delivery of siRNA
    • 12. siRNA delivery by lentiviral vectors: design and applications
    • 13. Liposomal delivery of siRNAs in mice
    • 14. Chemical modifications to achieve increased stability and sensitive detection of siRNA
    • 15. RNAi in postimplantation mouse embryos
    • 16. In ovo RNAi opens new possibilities for functional genomics in vertebrates
    • Part IV. Gene Silencing in Model Organisms:
    • 17. Practical applications of RNAi in C. elegans
    • 18. Inducible RNAi as a forward genetic tool in Trypanosoma brucei
    • 19. RNAi gene silencing in yeast
    • 20. RNA silencing in filamentous fungi: Mucor circinelloides as a model organism
    • 21. RNAi and gene silencing phenomenon mediated by viral suppressors in plants
    • Part V. Drug Target Validation:
    • 22. Delivering siRNA in vivo for functional genomics and novel therapeutics
    • 23. The role of RNAi in drug target validation: application to Hepatitis C
    • 24. RNAi in the drug discovery process
    • 25. RNAi: use in the drug discovery process
    • Part VI. Therapeutic and Drug Development:
    • 26. RNAi-mediated silencing of viral gene expression and replication
    • 27. RNAi in drug development: practical considerations
    • 28. RNAi for the treatment of liver diseases
    • 29. RNAi applications in animal systems
    • Part VII. Genome Wide RNAi and High Through-Put Analysis:
    • 30. High through-put RNAi-by-soaking in Caenorhabditis elegans
    • 31. Tools for integrative genomics: genome-Wide RNAi and expression profiling in Drosophila
    • 32. Microarray analysis and RNA silencing to determine genes functionally important in Mesothelioma
    • 33. High through-put RNAi
    • 34. Generation of highly specific vector-based shRNAi libraries directed against the entire human genome.
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    9780521205177 Colour Plates
    Size: 10.62 MB
    Type: application/pdf
      Contributors
    • Andrew Fire, Alla Grishok, Jason W. Myers, James E. Ferrell, Nathaniel R. Dudley, Ahmad Z. Amin, Bob Goldstein, Amy E. Pasquinelli, Anna M. Krichevsky, Shih-Chu Kao, Li-Huei Tsai, Kenneth S. Kosik, Queta Boese, William S. Marshall, Anastasia Khvorova, Yerramilli V. B. K. Subrahmanyam, Eric Lader, Ye Ding, Charles E. Lawrence, M. Sohail, G. Doran, Kathy Latham, Vince Pallotta, Lance Ford, Mike Byrom, Mehdi Banan, Po-Tsan Ku, David Brown, Ying Mao, Chris Mello, Laurence Lamarcq, Brad Scherer, Thomas Quinn, Robert Larsen, Marcia Tan, Patty Wong, Andrew Farmer, Oded Singer, Gustavo Tiscronia, Inder M. Verma, M. Sioud, Dag R. Sørrensen, Philipp Hadwiger, Hans-Peter Vornlocher, Frank Buchholz, Federico Calegari, Ralf Kittler, Wieland B. Huttner, Dimitris Bourikas, Thomas Baeriswyl, Rejina Sadhu, Esther T. Stoeckli, Karen E. Stephens, Olivier Zugasti, Nigel J. O'Neil, Patricia Kuwabara, Mark E. Drew, Shawn A. Motyka, James C. Morris, Zefeng Wang, Paul T. Englund, Greg Arndt, Rosa M. Ruiz-Vazquez, Ramachandran Vanitharani, Padmanabhan Chellappan, Claude M. Fauquet, Patrick Lu, Martin C. Woodle, Antje Ostareck-Lederer, Sandra Clauder-Münster, Rolf Thermann, Maria Polycarpou-Schwarz, Marc Gentzel, Matthias Wilm, Joe D. Lewis, Steven A. Haney, Peter Lapan, Jeff Aalfs, Chris Childs, Paul Yaworsky, Chris Miller, Neil J. Clarke, John E. Bisi, Caretha L. Creasy, Michael K. Dush, Kris J. Fisher, John M. Johnson III, Christopher J. Ring, Mark R. Edbrooke, Derek M. Dykxhoorn, Dmitry Samarsky, Margaret Taylor, Mark A. Kay, Anton P. McCaffrey, Lars Zender, Michael Peter Manns, Stefan Kubicka, L. Scherer, John Rossi, Asako Sugimoto, Michael Boutros, Marc Hild, Maria E. Ramos-Nino, Brooke T. Mossman, Howard Y. Chang, Nancy N. Wang, Jen-Tsan Chi, Makoto Miyagishi, Sahohime Matsumoto, Takashi Futami, Hideo Akashi, Krishnarao Appasani, Yasuomi Takagi, Shizuyo Sutou, Takashi Kadowaki, Ryozo Nagai, Kazunari Taira